International Citrus Genomics Consortium
International Citrus Genome / Genomics Consortium

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Events


JGI - Why Sequence Sweet Orange?
http://www.jgi.doe.gov/sequencing/why/3128.html

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To obtain JGI sweet orange genomic sequences corresponding to a citrus ESTs:

1) Do a BLAST search at  the server : http://138.23.191.145/blast/index.html

       In the Database box at the top of the page, select "JGI Citrus". 
       This will return the BLAST hits

2) To fetch the actual sequences, go to http://harvest-web.org/utilmenu.wc?job=JGI_Citmenu

This allows you to enter a text file of sequence ids and retrieve the sequences.

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Coming soon, a multi-hundred locus gene-specific map of C. sinensis, with synteny to Arabidopsis and Poplar.

 

Current Citrus EST entries in GenBank dbEST

Citrus sinensis
203,752
Poncirus trifoliata
62,344
Citrus clementina
62,250
Citrus reticulata
55,319
Citrus aurantium
13,665
Citrus x limonia
11,045
Citrus latifolia
8,756
Citrus aurantiifolia
8,219
Citrus limettioides
8,188
Citrus x paradisi
8,039
Citrus x paradisi x Poncirus trifoliata
7,954
Citrus reticulata x Citrus temple
5,823
Citrus sunki
5,216
Citrus unshiu
4,489
Citrus reshni
2,082
Citrus sinensis x Poncirus trifoliata
1,837
Citrus clementina x Citrus tangerina
1,766
Citrus macrophylla
1,076
Citrus jambhiri
989
Citrus medica
650
Citrus tamurana
211
Citrus natsudaidai
202
Citrus hassaku
154
Citrus clementina x Citrus reticulata
74
474,100

- Matthew Lyon - UCR
Tue Aug 19 04:04:02 PDT 2008
 
copyright (c) 2004 ICGC
Mon May 5 19:53:01 PDT 2008 -mL